PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OB03G12820.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 345aa    MW: 37271.1 Da    PI: 4.7419
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OB03G12820.1genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.15.7e-12176218754
                   HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS
           HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 
                   ++ErrRR+r+N++++ Lr+++Pk +      K++  +iL  +++Y+k+L
  OB03G12820.1 176 MAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDTIDYVKEL 218
                   79*********************66......****************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.129169218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-16174247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-13175224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.61E-5176223No hitNo description
Gene3DG3DSA:4.10.280.106.1E-16176239IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-9176218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MELDEESFLD ELMSLRREGA SPWQAAYQGG GGMMMSDLLF YGGEGPEARG GGRVDASPFQ  60
ELVPPMVPPP AAPQHPHEEF NFDCLSEVCN PYRSCALVPS EAASQTQQPT PLRDAMVAEE  120
ETSGDKAPLH GGGSSPPTFM FGGGAGESSE MMAGIRGVGG VHPRSKLHGT PSKNLMAERR  180
RRKRLNDRLS MLRSIVPKIS KMDRTSILGD TIDYVKELTD RIKTLEEEIG ATPEELDLLN  240
TMKDSSSGGN NEMLVRNSTK FDVERRGSGS TRIEICCPAN PGVLLSTVSA LEVLGLEIEQ  300
CVVSCFSDFG MQASCLQDGG KRQVASTDEI KQTLFRSAGY GGRCL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1177184ERRRRKRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK0600290.0AK060029.1 Oryza sativa Japonica Group cDNA clone:006-303-F08, full insert sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015690454.10.0PREDICTED: LOW QUALITY PROTEIN: transcription factor bHLH61-like
SwissprotQ9LSL11e-65BH093_ARATH; Transcription factor bHLH93
TrEMBLJ3LJQ60.0J3LJQ6_ORYBR; Uncharacterized protein
STRINGOB03G12820.10.0(Oryza brachyantha)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP13023799
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65640.19e-67beta HLH protein 93